Lab Publications

Amaral, LAN
Nature Physics, 1 (2024)
Qiao S, Bernasek S, Gallagher KD, O'Connell J, Yamada S, Bagheri N, Amaral LAN, Carthew RW
Development 151, dev201986 (2024)
Lei W, Zanchettin C, Ho ZE, Amaral LAN
APL Machine Learning 1, 046118 (2023)
Bernasek SM, Hur SSJ, Peláez-Restrepo N, Boisclair Lachance JF, Bakker R, Tejedor Navarro H, Sanchez-Luege N, Amaral LAN, Bagheri N, Rebay I, Carthew RW
Development 150, dev.201467 (2023)
Liu J, Amaral LAN, Keten S
Proteins: Structure, Function, and Bioinformatics 91, 183-195 (2023)
Stoeger T, Grant RA, McQuattie-Pimentel AC, Anekalla KR, Liu SS, Tejedor-Navarro H, Singer BD, Abdala-Valencia H, Schwake M, Tetreault M-P, Perlman H, Balch WE, Chandel NE, Ridge KM, Sznajder JI, Morimoto RI, Misharin AV, Budinger GRS, Amaral LAN
Nature Aging 2, 1191-1206 (2022)
Lei WH, Alves LGA, Amaral LAN
Nature Communications , 4252 (2022)
Amaral LAN
Nature Machine Intelligence 4, 416-417 (2022)
Pah AR, Schwartz DL, Sanga S, Alexander CS, Hammond K, Amaral LAN, SCALES OKN Consortium
AI Magazine 43, 69-74 (2022)
Bechel MA, Pah RA, Persell SD, Weiss CH, Amaral LAN
BMC Medical Research Methodology  22, 69 (2022)
Stoeger T, Amaral LAN
PLOS Biology 20, e3001520 (2022)
Lee HA, Alves LGA, Amaral LAN
Physical Review E 103, 022320 (2021)
Stoeger T, Amaral LAN
eLife 9, e61981 (2020)
Liu J, Amaral LAN, Keten S
Proteins 89, 276-288 (2020)
Pah AR, Schwartz DL, Sanga S, Clopton ZD, DiCola P, Davis Mersey R, Alexander CS, Hammond KJ, Amaral LAN
Science 369, 134-136 (2020)
Amaral LAN, Moreira JAG, Dunand ML, Tejedor Navarro H, Lee HA
PLOS One, 0229662 (2020)
Bernasek SM, Peláez N, Carthew RW, Bagheri N, Amaral LAN
PLOS Computational Biology, 1007406 (2020)
Alves LGA, Aleta A, Rodrigues FA, Moreno Y, Amaral LAN,
New Journal of Physics 23, 013043 (2020)
Gerlach M, Shi H, Amaral LAN
Nature Machine Intelligence 1, 606-612 (2019)
Bechel MA, Pah RA, Shi H, Mehrotra S, Persell SD, Weiner S, Wunderink RG, Amaral LAN, Weiss CH
PLOS One 14, e0222826 (2019)
Times cited: 1
Gerlach M, Revelle W. Amaral LAN
Nature Human Behaviour 3, 1047-1048 (2019)
Cassidy JJ, Bernasek SM, Bakker R, Giri R, Pelaez N, Eder B, Bobrowska A, Bagheri N, Amaral LAN, Carthew RW
Cell 178, 980-992 (2019)
Shi H, Gerlach M, Diersen I, Downey D, Amaral LAN
Proceedings of the 22nd International Conference on Artificial Intelligence and Statistics (AISTATS 2019) 89, 816-826 (2019)
Poncela-Casasnovas J, Gerlach M, Aguirre N, Amaral LAN
Nature Human Behaviour 3, 568-575 (2019)
Stoeger T, Gerlach M, Morimoto RI, Amaral LAN
PLOS Biology 16, e3000075 (2018)
Stoeger T, Gerlach M, Morimoto RI, Amaral LAN
PLOS Biology 16, e2006643 (2018)
Gerlach M, Farb B, Revelle W, Amaral LAN
Nature Human Behaviour 2, 735-742 (2018)
Hockenberry AJ, Jewett MC, Amaral LAN, Wilke CO
Molecular Biology and Evolution 35, 2487-2498 (2018)
Liu SS, Hockenberry HJ, Jewett MC, Amaral LAN
Journal of the Royal Society Interface 15, 0170667 (2018)
Hockenberry AJ, Stern AJ, Amaral LAN, Jewett MC
Molecular Biology and Evolution 35, 582-592 (2017)
Alves LGA, Winter PB, Ferreira LN, Brielmann RM, Morimoto RI, Amaral LAN
Physical Review E 96, 022417 (2017)
Budinger GRS, Kohanski RA, Gan W, Kobor MS, Amaral LAN, Armanios M, Kelsey KT, Pardo A, Tuder R, Macian F, Chandel N, Vaughan D, Rojas M, Mora AL, Kovacs E, Duncan SR, Finkel T, Choi A, Eickelberg O, Chen D, Agusti A, Selman M, Balch WE, Busse P, Lin A, Morimoto R, Sznajder JI, Thannickal VJ.
Journals of Gerontology Series A: Biomedical Sciences and Medical Sciences 72, 1492-1500 (2017)
Hockenberry AJ, Pah AR, Jewett MC, Amaral LAN
Open Biology 7, 160239 (2017)
Pah AR, Hagan J, Jennings AL, Jain A, Albrecht K, Hockenberry AJ, Amaral LAN
Nature Human Behavior 1, 0040 (2017)
Liu SS, Hockenberry AJ, Lancichinetti A, Jewett MC, Amaral LAN
PLOS Computational Biology 12, 1005184 (2016)
Zeng XHT, Duch J, Sales-Pardo M, Moreira JAG, Radicchi F, Ribeiro HV, Woodruff TK, Amaral LAN
PLOS Biology 14, 1002573 (2016)
Winter PB, Brielmann RB, Timkovich NP, Navarro HT, Teixeira-Castro A, Morimoto RI, Amaral LAN
Scientific Reports 6, 34859 (2016)
Yang C, Hockenberry AJ, Jewett MC, Amaral LAN
G3 : Genes | Genomes | Genetics 6, 3467-3474 (2016)
Peláez N, Gavalda-Miralles A, Wang B, Tejedor Navarro H, Gudjonson H, Rebay I, Dinner AR, Katsaggelos AK, Amaral LAN, Carthew RW
eLife 4, e08924 (2015)
Moreira JAG, Zeng XHT, Amaral LAN
PLoS ONE 10, e0143108 (2015)
Massucci FA, Guimera R, Amaral LAN, Sales-Pardo M
Physical Review E 91, 062703 (2015)
Wasserman M, Mukherjee S, Scott K, Zeng XHT, Radicchi F, Amaral LAN
Journal of the Association for Information Science and Technology 66(4), 858-868 (2015)
Sirer MI, Maroulis S, Guimerà R, Wilensky U, Amaral LAN
Journal of Policy Analysis and Management, 34, 358-377 (2015)
Lancichinetti A, Sirer MI, Wang JX, Acuna D, Körding K, Amaral LAN
Physical Review X 5, 011007 (2015)
Poncela-Casasnovas J, Spring B, McClary D, Moller AC, Mukogo R, Pellegrini CA, Coons MJ, Davidson M, Mukherjee S, Amaral LAN
Journal of the Royal Society Interface 12, 20140686 (2015)
Wasserman M, Zeng XHT, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 112(5), 1281-1286 (2015)
Gavaldà-Miralles A, Otto JS, Bustamante FE, Amaral LAN, Duch J, Guimerà R
Proceedings of the 10th ACM CoNEXT 2014, 319-324 (2014)
Weiss CH, Poncela-Casasnovas J, Glaser JI, Pah AR, Persell SD, Baker DW, Wunderink RG, Amaral LAN
Physical Review X 4, 041008 (2014)
Times cited: 2
Gavaldà-Miralles A, Choffnes DR, Otto JS, Sánchez MA, Bustamante FE, Amaral LAN, Duch J, Guimerà R
Proc. Natl. Acad. Sci. U. S. A. 111, 15322-15327 (2014)
Hockenberry AJ, Sirer MI, Amaral LAN, Jewett MC
Molecular Biology and Evolution 31(7), 1880-1893 (2014)
Times cited: 2
Amaral LAN
The Scientist, 37921 (2014)
Melo HPM, Franks A, Moreira AA, Diermeier D Andrade Jr JS, Amaral LAN
PLOS ONE 8, e78401 (2013)
Weiss CH, Amaral LAN
Am. J. of Respirat. and Crit. Care Med. 188, 636-638 (2013)
Times cited: 1
Sales-Pardo M, Diermeier D, Amaral LAN
PLOS ONE 8, e58989 (2013)
Times cited: 1
Pah AR, Guimera R, Mustoe AM, Amaral LAN
Scientific Reports 3, 1695 (2013)
Times cited: 1
Wang JX, Bartolotti J, Amaral LAN, Booth JR
PLOS ONE 8, e59204 (2013)
Times cited: 4
Ribeiro HV, Mendes RS, Lenzi EK, del Castillo-Mussot M, Amaral LAN
PLOS ONE 8, e54165 (2013)
Times cited: 4
Duch J, Zeng XHT, Sales-Pardo M, Radicchi F, Otis S, Woodruff TK, Amaral LAN
PLOS ONE 7, e51332 (2012)
Times cited: 20
Seaver SMD, Sales-Pardo M, Guimerà R, Amaral LAN
PLOS Computational Biology 8, e1002762 (2012)
Times cited: 1
McMullen PD, Aprison EZ, Winter PB, Amaral LAN, Morimoto RI, Ruvinsky I
PLoS Computational Biology 8, e1002338 (2012)
Times cited: 9
Radicchi F, Baronchelli A, Amaral LAN
PLoS ONE 7, e29910 (2012)
Times cited: 13
Campanharo ASLO, Sirer MI, Malmgren RD, Ramos FM, Amaral LAN
PLoS ONE 6, e23378 (2011)
Times cited: 36
Weiss CH, Moazed F, McEvoy CA, Singer BD, Szleifer I, Amaral LAN, Kwasny M, Watts CM, Persell SD, Baker DW, Sznajder JI, Wunderink RG
American Journal of Respiratory and Critical Care Medicine 184, 680-686 (2011)
Times cited: 58
Stouffer DB, Rezende EL, Amaral LAN
Journal of Animal Ecology 80, 632-639 (2011)
Times cited: 21
Weiss CH, Amaral LAN
Am. J. of Respirat. and Crit. Care Med. 182, 1461-1462 (2010)
Guimera R, Stouffer DB, Sales-Pardo M, Leicht EA, Newman MEJ, Amaral LAN
Ecology 91, 2941-2951 (2010)
Times cited: 43
Maroulis S, Guimera R, Petry H, Stringer MJ, Gomez LM, Amaral LAN, Wilensky U
Science 330, 38-39 (2010)
Times cited: 25
McMullen PD, Morimoto RI, Amaral, LAN
Proc. Natl. Acad. Sci. U. S. A. 107, 13690-13695 (2010)
Times cited: 6
Duch J, Waitzman JS, Amaral LAN
PLoS ONE 5, e10937 (2010)
Times cited: 46
Malmgren RD, Ottino JM, Amaral LAN
Nature 463, 622-626 (2010)
Times cited: 22
Anteneodo C, Malmgren RD, Chialvo DR
European Physical Journal B 75, 389-394 (2010)
Times cited: 14
Stringer MJ, Sales-Pardo M, Amaral LAN
Journal of the American Society for Information Science and Technology 61, 1377-1385 (2010)
Times cited: 31
Choffnes D Duch J, Malmgren RD, Guimera R, Bustamante F, Amaral LAN
Proceedings of the 9th ACM IPTPS International Conference on Peer-to-Peer Systems, 13 (2010)
Guimera R, Sales-Pardo M
Proc. Natl. Acad. Sci. U. S. A. 106, 22073-22078 (2009)
Times cited: 129
Sawardecker EN, Amundsen CA, Sales-Pardo M, Amaral LAN
European Physical Journal B 72, 671-677 (2009)
Times cited: 6
Malmgren RD, Stouffer DB, Campanharo ASLO, Amaral LAN
Science 325, 1696-1700 (2009)
Times cited: 92
Malmgren RD, Hofman JM, Amaral LAN, Watts DJ
Proceedings of the 15th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 607-616 (2009)
Times cited: 22
Ivanov PC, Ma QDY, Bartsch RP, Hausdorff JM, Amaral LAN, Schulte-Frohlinde V, Stanley HE, Yoneyama M
Physical Review E 79, 041920 (2009)
Times cited: 34
Sawardecker EN, Sales-Pardo M, Amaral LAN
European Physical Journal B 67, 277-284 (2009)
Times cited: 25
Seaver SMD, Moreira AA, Sales-Pardo M, Malmgren RD, Diermeier D, Amaral LAN
European Physical Journal B 67, 369-375 (2009)
Times cited: 3
Majumder SR, Diermeier D, Rietz TA, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 106, 679-684 (2009)
Times cited: 8
Stouffer DB, Ng CA, Amaral LAN
AICHE Journal 54, 3040-3047 (2008)
Times cited: 5
Malmgren RD, Stouffer DB, Motter AE, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 105, 18153-18158 (2008)
Times cited: 156
Ng CA, Berg MB, Jude DJ, Janssen J, Charlebois PM, Amaral LAN, Gray KA
Environmental Toxicology and Chemistry 27, 2186-2195 (2008)
Times cited: 14
Smart AG, Amaral LAN, Ottino JM
Proc. Natl. Acad. Sci. U. S. A. 105, 13223-13228 (2008)
Times cited: 35
Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 105, 6795-6796 (2008)
Times cited: 15
Stringer MJ, Sales-Pardo M, Amaral LAN
PLoS ONE 3(2), e1683 (2008)
Times cited: 58
Kho, A, Sales-Pardo, M, Wilson, J
IEEE Eng. Med. Biol. Mag. 27, 26-28 (2008)
Times cited: 1
Sales-Pardo M, Chan AOB, Amaral LAN, Guimera R
Gene 402, 81-93 (2007)
Times cited: 2
Sales-Pardo M, Guimera R, Moreira AA, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 104, 15224-15229 (2007)
Times cited: 221
Guimera R, Sales-Pardo M, Amaral LAN
Physical Review E 76, 036102 (2007)
Times cited: 155
Stouffer DB, Camacho J, Jiang W, Amaral LAN
Proc. R. Soc. B-Biol. Sci. 274, 1931-1940 (2007)
Times cited: 68
Amaral LAN, Uzzi B
Management Science 53, 1033-1035 (2007)
Times cited: 46
Guimera R, Sales-Pardo M, Amaral LAN
Bioinformatics 23, 1616-1622 (2007)
Times cited: 35
Camacho J, Stouffer DB, Amaral LAN
Journal of Theoretical Biology 246, 260-268 (2007)
Times cited: 22
Amaral LAN
AIP Conf. Proc. 922, 641-646 (2007)
Diaz-Guilera A, Moreira AA, Guzman L, Amaral LAN
Journal of Statistical Mechanics - Theory and Experiment, P01013 (2007)
Times cited: 1
Guimera R, Sales-Pardo M, Amaral LAN
Nature Physics 3, 63-69 (2007)
Times cited: 150
Stouffer DB, Camacho J, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 103, 19015-19020 (2006)
Times cited: 68
Amaral LAN, Guimera R
Nature Physics 2, 75-76 (2006)
Times cited: 14
Amaral LAN
Annals of Vascular Surgery 19, 753-754 (2005)
Times cited: 1
Matia K, Amaral LAN, Luwel M, Moed HF, Stanley HE
Journal of the American Society for Information Science and Technology 56, 893-902 (2005)
Times cited: 19
Moreira AA, Amaral LAN
Physical Review Letters 94, 218702 (2005)
Times cited: 38
Guimera R, Mossa S, Turtschi A, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 102, 7794-7799 (2005)
Times cited: 574
Sales-Pardo M, Guimera R, Moreira AA, Widom J, Amaral LAN
Physical Review E 71, 051902 (2005)
Times cited: 103
Stouffer DB, Camacho J, Guimera R, Ng CA, Amaral LAN
Ecology 86, 1301-1311 (2005)
Times cited: 99
Guimera R, Uzzi B, Spiro J, Amaral LAN
Science 308, 697-702 (2005)
Times cited: 316
Guimera R, Amaral LAN
Nature 433, 895-900 (2005)
Times cited: 1172
Guimera R, Amaral LAN
Journal of Statistical Mechanics - Theory and Experiment, P02001 (2005)
Times cited: 133
Amaral LAN, Diaz-Guilera A, Moreira AA, Goldberger AL, Lipsitz LA
Proc. Natl. Acad. Sci. U. S. A. 101, 15551-15555 (2004)
Times cited: 66
Moreira AA, Mathur A, Diermeier D, Amaral LAN
Proc. Natl. Acad. Sci. U. S. A. 101, 12085-12090 (2004)
Times cited: 38
Guimera R, Sales-Pardo M, Amaral LAN
Physical Review E 70, 025101 (2004)
Times cited: 330
Amaral LAN, Soares DJB, da Silva LR, Lucena LS, Saito M, Kumano H, Aoyagi N, Yamamoto Y
Europhysics Letters 66, 448-454 (2004)
Times cited: 7
Amaral LAN, Ottino JM
European Physical Journal B 38, 147-162 (2004)
Times cited: 205
Guimera R, Amaral LAN
European Physical Journal B 38, 381-385 (2004)
Times cited: 200
Fukuda K, Stanley HE, Amaral LAN
Physical Review E 69, 021108 (2004)
Times cited: 30
Amaral LAN, Ottino JM
Chemical Engineering and Science 59, 1653-1666 (2004)
Times cited: 33
Ohashi K, Bleijenberg G, van der Werf S, Prins J, Amaral LAN, Natelson BH, Yamamoto Y
Methods of Information in Medicine  43, 26-29 (2004)
Times cited: 13
Ohashi K, Amaral LAN, Natelson BH, Yamamoto Y
Physical Review E 68, 065204 (2003)
Times cited: 33
Liljeros F, Edling CR, Stanley HE, Aberg Y, Amaral LAN
Nature 423, 606-606 (2003)
Times cited: 8
Fukuda K, Amaral LAN, Stanley HE
Europhysics Letters 62, 189-195 (2003)
Times cited: 24
Liljeros F, Edling CR, Amaral LAN
Microbes and Infections 5, 189-196 (2003)
Times cited: 133
Fukuda K, Amaral LAN, Stanley HE
IEEE 2003 Global Communications Conference (GlobeComm 2003), 4069-4073 (2003)
Times cited: 4
Moreira AA, Andrade JS, Amaral LAN
Physical Review Letters 89, 268703 (2002)
Times cited: 26
Camacho J, Guimera R, Amaral LAN
Physical Review Letters 88, 228102 (2002)
Times cited: 154
Mossa S, Barthelemy M, Stanley HE, Amaral LAN
Physical Review Letters 88, 138701 (2002)
Times cited: 88
Camacho J, Guimera R, Amaral LAN
Physical Review E 65, 030901 (2002)
Times cited: 51
Amaral, LAN, Gopikrishnan, P, Plerou, V, Stanley, HE
Physica A 299, 127-136 (2001)
Times cited: 41